Faculty Information - Henrik SKIBBE

（Last updated : 2025-04-16 10:03:48）

Henrik SKIBBE
Department Matsuyama University Department of Informatics, Faculty of Informatics

Position Professor

Publications

1.	2017/07	Article	Spherical tensor algebra: a toolkit for 3D image processing (Collaboration)
2.	2023/10	Article	Exploring the performance of implicit neural representations for brain image registration (Collaboration)
3.	2023/06	Article	The Brain/MINDS Marmoset Connectivity Resource: An open-access platform for cellular-level tracing and tractography in the primate brain (Collaboration)
4.	2024/12	Article	Multi-scale Stochastic Generation of Labelled Microscopy Images for Neuron Segmentation (Collaboration)
5.	2023/10	Article	Implicit neural representations for joint decomposition and registration of gene expression images in the marmoset brain (Collaboration)
6.	2024/01	Article	Improving segmentation of objects with varying sizes in biomedical images using instance-wise and center-of-instance segmentation loss function (Collaboration)
7.	2023/04	Article	An automated pipeline to create an atlas of in situ hybridization gene expression data in the adult marmoset brain (Collaboration)
8.	2018/07	Article	PAT—Probabilistic axon tracking for densely labeled neurons in large 3-D micrographs (Collaboration)
9.	2011/12	Article	Fast rotation invariant 3D feature computation utilizing efficient local neighborhood operators (Collaboration)
10.	2014/10	Article	Efficient Monte Carlo image analysis for the location of vascular entity (Collaboration)
11.	2025/01	Article	Prediction of white matter hyperintensities evolution one-year post-stroke from a single-point brain MRI and stroke lesions information (Collaboration)
12.	2023/07	Article	Local and long-distance organization of prefrontal cortex circuits in the marmoset brain (Collaboration)
13.	2025/01	Article	Serial Two-Photon Tomography of the Whole Marmoset Brain for Neuroanatomical Analyses (Collaboration)
14.	2024/10	Article	Machine learning-guided reconstruction of cytoskeleton network from (Collaboration)
15.	2024/05	Article	A new family of instance-level loss functions for improving instance-level segmentation and detection of white matter hyperintensities in routine clinical brain MRI (Collaboration)
16.	2023/12	Article	Use of DeTerm for Automated Drosophila Dendrite Arbor Terminal Counts (Collaboration)
17.	2023/10	Article	Distinctiveness and continuity in transcriptome and connectivity in the anterior-posterior axis of the paraventricular nucleus of the thalamus (Collaboration)
18.	2023/03	Article	A dataset of rodent cerebrovasculature from in vivo multiphoton fluorescence microscopy imaging (Collaboration)
19.	2023/03	Article	Tomographic tract tracing and data driven approaches to unravel complex 3D fiber anatomy of DBS relevant prefrontal projections to the diencephalic-mesencephalic junction in the marmoset (Collaboration)
20.	2022/07	Article	A spiking neural network builder for systematic data-to-model workflow (Collaboration)
21.	2021/09	Article	Probabilistic Deep Learning with Adversarial Training and Volume Interval Estimation - Better Ways to Perform and Evaluate Predictive Models for White Matter Hyperintensities Evolution (Collaboration)
22.	2020/12	Article	Optimization and validation of diffusion MRI-based fiber tracking with neural tracer data as a reference (Collaboration)
23.	2020/09	Article	Cellular-resolution gene expression profiling in the neonatal marmoset brain reveals dynamic species-and region-specific differences (Collaboration)
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